Massive transoceanic gene flow in a freshwater turtle (Testudines: Geoemydidae: Mauremys rivulata)

The freshwater turtle Mauremys rivulata ranges from the Adriatic coast of the Balkan Peninsula through the Aegean region and coastal western and southern Turkey southwards to Israel. In addition, it occurs on several Aegean islands, Crete and Cyprus. Previous investigations using mtDNA sequences found virtually no genetic differentiation across its distribution range, despite some major biogeographical barriers for terrestrial and freshwater biota. Thus, the absence of any phylogeographical differentiation would be unexpected. To re‐examine genetic differentiation within M. rivulata, here we use a comprehensive rangewide sampling and information of 13 unlinked polymorphic microsatellite loci and compare these data against mtDNA variation. Our microsatellite analyses reveal a weak population structuring which conflicts, however, with most biogeographical barriers. We conclude that the genetic structure in the vast majority of the species' range has been shaped by massive transoceanic gene flow. This explanation is unlikely for the northernmost populations, which seem rather to be genetically impacted by intentionally released foreign turtles.     

Pre-processing Agilent microarray data

Background  

Pre-processing methods for two-sample long oligonucleotide arrays, specifically the Agilent technology, have not been extensively studied. The goal of this study is to quantify some of the sources of error that affect measurement of expression using Agilent arrays and to compare Agilent's Feature Extraction software with pre-processing methods that have become the standard for normalization of cDNA arrays. These include log transformation followed by loess normalization with or without background subtraction and often a between array scale normalization procedure. The larger goal is to define best study design and pre-processing practices for Agilent arrays, and we offer some suggestions.     

beta-Thalassaemia with increased haemoglobin A2 in Turkey. A study of 164 thalassaemic heterozygotes.

Clinical and haematological findings of 164 Turkish beta-thalassaemic heterozygotes with increased Hb-A2 are presented. The series comprised of 19 children, 81 females and 64 males. The majority of these thalassaemic individuals were asymptomatic and only 4 of them had slight or moderate splenomegaly. The mean values of haemoglobin concentration, PCV, MCH and MCHC were significantly lower than those of the corresponding normal controls. Erythrocytosis was present in 33% of them. Hb-A2 values ranged between 3.8 and 6.1%, and between 3.8 and 6.5% as assessed by the methods of DEAE- or DE-cellulose chromatography, respectively. Hb-F was found to be above the normal range in 15.1%. It is established that beta-thalassaemia with increased Hb-A2 is the most frequent variety of thalassaemia in Turkey (80%) and both beta+- and beta0-thalassaemia genes were present in this country. The regional distribution of beta-thalassaemia in Turkey is also presented and the origin of beta-thalassaemia genes in Turkish people is discussed.     

Nutritional value of some algae from the north-western Mediterranean coast of Egypt

Fourteen taxa from Chlorophyta, Rhodophyta and Phaeophyta were collected from seven stations at different depths, along the north-western Mediterranean coast of Egypt during winter and summer 2006. Total carbohydrates (TCH), total protein (TPr), total lipids (TL), chlorophyll a, β-carotene, minerals and trace metals were determined in a total of 50 specimens. The concentrations of these components varied significantly with respect to the algal taxa and showed different patterns of distribution in the three classes. The content of TCH ranged from 5 to 20.9?%, being much higher for Cystoseira spinosa (20.9?%), TPr 3.86 to 27.65?% where Gelidium corneum showed the maximum value and TL content displayed wide variation (2.34 to 48.95?%), with Sargassum hornschuchii having the highest values. A minor component was β-carotene in all samples (1.80?2.50?×?10^?3 mg (100 g)^?1) which was much lower than in vegetables, in contrast to chlorophyll a concentrations which have attained high values (6.70?94.20 mg (100 g)^?1) and were lower than in vegetables. Mineral content was abundant in all samples and was higher than in common food and vegetables, whereas the measured trace metals all exceeded the permissible doses and were far from the accepted concentrations in the regulations of many countries. This limits their use in food consumption, except copper which recorded acceptable concentrations in the study. The maximum values of phosphorus (3,305 mg (100 g^?1), potassium (930 mg (100 g^?1) and calcium (3,070 mg (100 g^?1) were recorded in members of Chlorophyceae: Codium bursa, Udotea sp. and Udotea petiolata, whereas the red alga Rhodymenia ardissonei had the lowest concentrations in iodine (80 ppm) and sodium (1,450 mg (100 g)^?1) and the highest concentrations in the trace metals copper (3.89 ppm), nickel (13.14 ppm), zinc (38.87 ppm) and a relatively large amount of lead (41.60 ppm).     

Haptoglobin and transferrin types in Eti-Turks

Haptoglobin and transferrin types were examined in Eti-Turks. The Hp1 frequency was 0.26. With the exception of two individuals with transferrin D, only the transferrin C was observed. The gene frequencies were in the range of most of the Asiatic populations including Turks.